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deseq2 normalized count data  (Broad Institute Inc)

 
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    Broad Institute Inc deseq2 normalized count data
    Deseq2 Normalized Count Data, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/deseq2+normalized+count+data/deseq2/pmc12180575-162-30-44
    Average 90 stars, based on 1 article reviews
    deseq2 normalized count data - by Bioz Stars, 2026-09
    90/100 stars

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    Article Title: Transcriptomic Differences Between Immortalized Oral and Skin Keratinocytes
    Article Snippet: .. To confirm our GO BP and reactome enrichment analysis and possibly identify other processes enriched in TIGK relative to HaCaT, we performed GSEA for GO BP and reactome terms utilizing DESeq2 normalized count data for our mRNA‐sequencing generated gene sets as recommended by the Broad Institute [ , ]. ..



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    deseq2 normalized count data  (Broad Institute Inc)
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    Broad Institute Inc deseq2 normalized count data
    Deseq2 Normalized Count Data, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    rna-seq raw data and normalized deseq2 counts  (Biotechnology Information)
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    Biotechnology Information rna-seq raw data and normalized deseq2 counts
    Light exposure and minocycline exert global effects on the retinal transcriptome. a Gene Expression Dynamics Inspector (GEDI) analysis of the complete RNA-seq dataset (Gene Expression Omnibus Series Nr. GSE71025) from control retinas and light-exposed retinas in the absence or presence of minocycline. Biological duplicates were analyzed for each condition and the pseudo-color scale indicates high ( red ) or low ( blue ) expression levels. b , c <t>DESeq2</t> analysis to determine differential gene expression between the indicated groups using a log2 fold change cutoff of ≥2 and ≤−2. The MA-plots demonstrate that light exposure caused a global induction of 217 genes ( b ), whereas light exposure plus minocycline administration reversed this effect with many counter-regulated transcripts ( c )
    Rna Seq Raw Data And Normalized Deseq2 Counts, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/deseq2+normalized+count+data/deseq2/pmc04650866-69-6-19
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    Light exposure and minocycline exert global effects on the retinal transcriptome. a Gene Expression Dynamics Inspector (GEDI) analysis of the complete RNA-seq dataset (Gene Expression Omnibus Series Nr. GSE71025) from control retinas and light-exposed retinas in the absence or presence of minocycline. Biological duplicates were analyzed for each condition and the pseudo-color scale indicates high ( red ) or low ( blue ) expression levels. b , c DESeq2 analysis to determine differential gene expression between the indicated groups using a log2 fold change cutoff of ≥2 and ≤−2. The MA-plots demonstrate that light exposure caused a global induction of 217 genes ( b ), whereas light exposure plus minocycline administration reversed this effect with many counter-regulated transcripts ( c )

    Journal: Journal of Neuroinflammation

    Article Title: Minocycline counter-regulates pro-inflammatory microglia responses in the retina and protects from degeneration

    doi: 10.1186/s12974-015-0431-4

    Figure Lengend Snippet: Light exposure and minocycline exert global effects on the retinal transcriptome. a Gene Expression Dynamics Inspector (GEDI) analysis of the complete RNA-seq dataset (Gene Expression Omnibus Series Nr. GSE71025) from control retinas and light-exposed retinas in the absence or presence of minocycline. Biological duplicates were analyzed for each condition and the pseudo-color scale indicates high ( red ) or low ( blue ) expression levels. b , c DESeq2 analysis to determine differential gene expression between the indicated groups using a log2 fold change cutoff of ≥2 and ≤−2. The MA-plots demonstrate that light exposure caused a global induction of 217 genes ( b ), whereas light exposure plus minocycline administration reversed this effect with many counter-regulated transcripts ( c )

    Article Snippet: The RNA-seq raw data and normalized DESeq2 counts of this study are publicly available at the National Center for Biotechnology Information Gene Expression Omnibus ( http://www.ncbi.nlm.nih.gov/geo/ ) as series record GSE71025.

    Techniques: Gene Expression, RNA Sequencing, Control, Expressing